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Registro Completo |
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
09/01/2023 |
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Data da última atualização: |
09/01/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ARIYOSHI, C.; SANT'ANA, G. C.; FELICIO, M. S.; SERA, G. H.; NOGUEIRA, L. M.; RODRIGUES, L. M. R.; FERREIRA, R. V.; SILVA, B. S. R. da; RESENDE, M. L. V. de; DESTÉFANO, S. A. L.; DOMINGUES, D. S.; PEREIRA, L. F. P. |
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Afiliação: |
CAROLINE ARIYOSHI, UNIVERSIDADE ESTADUAL DE LONDRINA; GUSTAVO CÉSAR SANT'ANA, TROPICAL MELHORAMENTO & GENÉTICA; MARIANE SILVA FELICIO, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; GUSTAVO HIROSHI SERA, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; LIVIA MARIA NOGUEIRA, UNIVERSIDADE ESTADUAL DE LONDRINA; LUCAS MATEUS RIVERO RODRIGUES, INSTITUTO AGRONÔMICO; RAFAELLE VECCHIA FERREIRA, UNIVERSIDADE ESTADUAL DE LONDRINA; BRUNA SILVESTRE RODRIGUES DA SILVA, UNIVERSIDADE ESTADUAL DE LONDRINA; MÁRIO LÚCIO VILELA DE RESENDE, UNIVERSIDADE FEDERAL DE LAVRAS; SUZETE APARECIDA LANZA DESTÉFANO, INSTITUTO BIOLÓGICO; DOUGLAS SILVA DOMINGUES, ESCOLA SUPERIOR DE AGRICULTURA LUIZ DE QUEIROZ; LUIZ FILIPE PROTASIO PEREIRA, CNPCa. |
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Título: |
Genome-wide association study for resistance to Pseudomonas syringae pv. garcae in Coffea arabica. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
Frontiers in Plant Science, v. 13, article 989847, 2022. |
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DOI: |
https://doi.org/10.3389/fpls.2022.989847 |
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Idioma: |
Inglês |
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Conteúdo: |
Bacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120 C. arabica Ethiopian accessions from a historical FAO collection, 11 C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleotide binding site leucine-rich repeat (NBS-LRR), respectively. These genes displayed a similar transcriptional downregulation profile in a C. arabica susceptible cultivar and in a C. arabica cultivar with quantitative resistance, when infected with P. syringae pv. garcae. However, peaks of upregulation were observed in a C. arabica cultivar with qualitative resistance, for both genes. Our results provide SNPs that have potential for application in Marker Assisted Selection (MAS) and expand our understanding about the complex genetic control of the resistance to BHB in C. arabica. In addition, the findings contribute to increasing understanding of the C. arabica domestication history. MenosBacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120 C. arabica Ethiopian accessions from a historical FAO collection, 11 C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleoti... Mostrar Tudo |
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Thesagro: |
Coffea Arábica. |
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Thesaurus Nal: |
Disease resistance; Genome; Genome-wide association study; Pseudomonas syringae group. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1150817/1/Genome-wide-association-study.pdf
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Marc: |
LEADER 03197naa a2200325 a 4500
001 2150817
005 2023-01-09
008 2022 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.3389/fpls.2022.989847$2DOI
100 1 $aARIYOSHI, C.
245 $aGenome-wide association study for resistance to Pseudomonas syringae pv. garcae in Coffea arabica.$h[electronic resource]
260 $c2022
520 $aBacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120 C. arabica Ethiopian accessions from a historical FAO collection, 11 C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleotide binding site leucine-rich repeat (NBS-LRR), respectively. These genes displayed a similar transcriptional downregulation profile in a C. arabica susceptible cultivar and in a C. arabica cultivar with quantitative resistance, when infected with P. syringae pv. garcae. However, peaks of upregulation were observed in a C. arabica cultivar with qualitative resistance, for both genes. Our results provide SNPs that have potential for application in Marker Assisted Selection (MAS) and expand our understanding about the complex genetic control of the resistance to BHB in C. arabica. In addition, the findings contribute to increasing understanding of the C. arabica domestication history.
650 $aDisease resistance
650 $aGenome
650 $aGenome-wide association study
650 $aPseudomonas syringae group
650 $aCoffea Arábica
700 1 $aSANT'ANA, G. C.
700 1 $aFELICIO, M. S.
700 1 $aSERA, G. H.
700 1 $aNOGUEIRA, L. M.
700 1 $aRODRIGUES, L. M. R.
700 1 $aFERREIRA, R. V.
700 1 $aSILVA, B. S. R. da
700 1 $aRESENDE, M. L. V. de
700 1 $aDESTÉFANO, S. A. L.
700 1 $aDOMINGUES, D. S.
700 1 $aPEREIRA, L. F. P.
773 $tFrontiers in Plant Science$gv. 13, article 989847, 2022.
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Registro original: |
Embrapa Café (CNPCa) |
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| Registros recuperados : 8 | |
| 3. |  | FARIAS, J. G. de M.; COSTA NETO, P. F. da; ALMEIDA, S. C. P. de; SCORTECCI, K. C. Construção de bibliiotecas subtrativa de cDNA de mamona associados ao estresse hídrico. CONGRESSO BRASILEIRO DE MAMONA, 5.; SIMPÓSIO INTERNACIONAL DE OLEAGINOSAS ENERGÉTICAS, 2.; FÓRUM CAPIXABA DE PINHÃO-MANSO, 1., 2012, Guarapari. Desafios e Oportunidades: anais. Campina Grande: Embrapa Algodão, 2012. p. 362| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Algodão. |
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| 5. | | MIOTTO, A.; CERETTA, C. A.; BRUNETTO, G.; NICOLOSO, F. T.; GIROTTO, E.; FARIAS, J. G.; TIECHER, T. L.; CONTI, L. De; TRENTIN, G. Copper uptake, accumulation and physiological changes in adult grapevines in response to excess copper in soil. Plant and Soil, The Hague, v. 374, n. 1-2, p. 593-610, Jan. 2014. Publicada online em 24 de setembro.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Pecuária Sul. |
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| 6. | | COSTA NETO, P. F. da; ALMEIDA, S. C. P. de; FARIAS, J. G. de M.; SCORTECCI, K. C. Efeito do estresse hídrico em plantas de mamona (Ricinus communis L.) da cultivar BRS ENERGIA. In: CONGRESSO BRASILEIRO DE MAMONA, 5.; SIMPÓSIO INTERNACIONAL DE OLEAGINOSAS ENERGÉTICAS, 2.; FÓRUM CAPIXABA DE PINHÃO-MANSO, 1., 2012, Guarapari. Desafios e Oportunidades: anais. Campina Grande: Embrapa Algodão, 2012. p. 155| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Algodão. |
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| 7. | | BARRETO, K. F. M.; ARAÚJO, L. P. L.; ALMEIDA, S. C. P. de; FARIAS, J. G. de M.; COSTA NETO, P. F. da; UCHÔA, A. F.; SCORTECCI, K. C. Identificação de proteínas diferencialmente expressas em mamoneira submetida a estresse hídrico. CONGRESSO BRASILEIRO DE MAMONA, 5.; SIMPÓSIO INTERNACIONAL DE OLEAGINOSAS ENERGÉTICAS, 2.; FÓRUM CAPIXABA DE PINHÃO-MANSO, 1., 2012, Guarapari. Desafios e Oportunidades: anais. Campina Grande: Embrapa Algodão, 2012. p. 378| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Algodão. |
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| 8. | | BRUNETTO, G.; ROSA, D. B.; AMBROSINI, V. G.; HEINZEN, J.; FERREIRA, P. A. A.; CERETTA, C. A.; SOARES, C. R. F. S.; MELO, G. W. B. de; SORIANI, H. H.; NICOLOSO, F. T.; FARIAS, J. G.; DE CONTI, L.; SILVA, L. O. S.; SANTANA, N.; COUTO, R. R.; JACQUES, R. J. S.; TIECHER, T. L. Use of phosphorus fertilization and mycorrhization as strategies for reducingcopper toxicity in young grapevines. Scientia Horticulturae, v. 248, p. 176-183, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Uva e Vinho. |
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| Registros recuperados : 8 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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